PhD candidate at the intersection of Cell-Cell Communication models and Spatial Omics

Job title:

PhD candidate at the intersection of Cell-Cell Communication models and Spatial Omics

Company

VIB

Job description

Project Overview
This PhD position is one of multiple positions within a larger project aimed at optimizing spatial omics analysis for a variety of biological applications. Your research will specifically focus on extending NicheNet, the Cell-Cell Communication Inference tool developed by the Saeys lab, for spatial omics data. You will collaborate closely with renowned groups, including the Martin Guilliams lab [https://guilliamslab.sites.vib.be/en#/] and the Chris Marine lab [https://marinelab.sites.vib.be/en] , leveraging extensive experience with spatial omics data generated at VIB (MERFish Vizgen, MACSima Miltenyi, 10X Visium-HD).What you will do
Develop and enhance NicheNet for integration with spatial omics data.Analyze and interpret spatial omics data to infer cell-cell communication pathways.Contribute to the development of new computational methods and tools for spatial omics data analysis.
Profile
Essential
You obtained a Master’s in Computer Science, Artificial Intelligence, Bioinformatics, Physics, Engineering, Bio-engineering, or equivalent.Background in systems biologyBackground in AI (deep learning, probabilistic modelling, generative AI) or machine learningProficient in Python or R programmingStrong communication skills in English
Desirable but not required
Preference will be given to candidates with experience with
processing scRNA-seq or spatial transcriptomics datahigh-performance computing and software containersKey personal characteristics
Strong interpersonal skills
Ability to work independently and as part of a team We offer
Competitive stipend and benefits packageFully funded PhD scholarship, but encouraged to apply for a national PhD fellowship (e.g., FWO)A versatile and challenging academic position with very diverse contacts in a world-class research environment operating at an international level, and various opportunities to broaden your expertise.Access to state-of-the-art compute & GPU infrastructureCollaborative and supportive research environmentAttendance of national and international conferencesTraining courses in academic, technical, and career skills.
How to apply?
Please complete the online application procedure and include a detailed CV, two reference letters, and a motivation letter.
For further information and questions, please send an email to Yvan Saeys (yvan.saeys@ugent.be [mailto:yvan.saeys@ugent.be] ).

Expected salary

Location

Gent, Oost-Vlaanderen

Job date

Tue, 18 Jun 2024 22:51:20 GMT

To help us track our recruitment effort, please indicate in your email/cover letter where (jobsnear.net) you saw this job posting.